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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
32
DNase-seq
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
1
FAIRE-seq
Assay category
196
DNA binding
36
DNA accessibility
7
Transcription
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
82
October, 2019
78
November, 2017
30
June, 2019
28
May, 2019
9
July, 2019
9
October, 2017
2
November, 2018
1
February, 2023
Available data
238
bam
217
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
239
Homo sapiens
Biosample type
222
tissue
17
primary cell
Organ
522
liver
359
pancreas
241
epithelium
239
brain
142
heart
133
kidney
131
connective tissue
127
vasculature
122
blood vessel
110
limb
60
blood
60
bodily fluid
53
musculature of body
48
artery
47
adipose tissue
38
nerve
24
spleen
22
embryo
20
vein
18
ureter
12
bone element
12
skeleton
7
eye
1
pituitary gland
Project
239
AMP
Genome assembly (visualization)
210
GRCh38
151
hg19
Lab
239
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
ibed
BIOSAMPLE
ASSAY
239 results
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ChIP-seq
DNase-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
brain
13
14
1
layer of hippocampus
20
temporal lobe
15
1
angular gyrus
15
caudate nucleus
14
1
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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