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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1578ChIP-seq
  • total RNA-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1578DNA binding
  • 389DNA accessibility
  • 124Transcription
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 392November, 2017
  • 234October, 2019
  • 218June, 2019
  • 193August, 2017
  • 120May, 2019
  • 104May, 2021
  • 95May, 2020
  • 94December, 2017
  • 87November, 2018
  • 79April, 2019
  • 74October, 2018
  • 49April, 2018
  • 48July, 2018
  • 46September, 2018
  • 39November, 2019
  • 38July, 2019
  • 34August, 2021
  • 34December, 2018
  • 27February, 2021
  • 25January, 2019
  • 24February, 2018
  • 18May, 2022
  • 15October, 2017
  • 11September, 2017
  • 3August, 2018
  • 3June, 2018
  • 3March, 2020
  • 2November, 2020
  • 1March, 2019
Available data
  • 2110bam
  • 1891bigWig
  • 1817bed narrowPeak
  • 1121fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 285tsv
  • 271bed bed3+
  • 153zippedFastqFolder
  • 102txt
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2103Homo sapiens
Biosample type
  • 1006tissue
  • 478cell line
  • 459primary cell
  • 164in vitro differentiated cells
  • 3stem cell
Organ
  • 522liver
  • 359pancreas
  • 241epithelium
  • 238brain
  • 142heart
  • 133kidney
  • 127vasculature
  • 126connective tissue
  • 122blood vessel
  • 110limb
  • 60blood
  • 60bodily fluid
  • 53musculature of body
  • 48artery
  • 47adipose tissue
  • 38nerve
  • 24spleen
  • 22embryo
  • 20vein
  • 18ureter
  • 8bone element
  • 8skeleton
  • 7eye
  • 1pituitary gland
Project
  • 2022AMP
  • 88T1D
Genome assembly (visualization)
  • 1722hg19
  • 1683GRCh38
Lab
  • 2007AMP-T2D consortium
  • 102Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 85inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

2110 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
liver12221
islet of Langerhans3013861
body of pancreas354422
heart left ventricle34322
kidney27131
cell line
HepG235911
GM1287860
EndoC_BH1151
Panc1131
smooth muscle cell of the coronary artery68
primary cell
monocyte8415
pancreatic beta cell13712
pancreatic alpha cell13612
pancreatic ductal cell13410
pancreatic acinar cell8512
in vitro differentiated cells
adipocyte531
neural progenitor cell2010
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
stem cell
hESC3
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