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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
8
single cell RNA-seq
1
Hi-C
Assay category
64
DNA accessibility
8
Transcription
1
3D chromatin structure
Date released
64
August, 2021
6
February, 2021
1
March, 2019
1
November, 2018
1
September, 2018
Available data
2110
bam
1891
bigWig
1817
bed narrowPeak
1121
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
285
tsv
271
bed bed3+
153
zippedFastqFolder
102
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
73
Homo sapiens
Biosample type
71
tissue
2
primary cell
Organ
69
kidney
1
liver
1
pancreas
Project
73
AMP
Genome assembly (visualization)
64
GRCh38
1
hg19
Lab
64
Katalin Susztak, Upenn
8
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
audit script error
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
73 results
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ATAC-seq
single cell RNA-seq
Hi-C
tissue
kidney
64
5
islet of Langerhans
1
liver
1
primary cell
pancreatic cell
2
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