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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
14
ChIP-seq
8
ATAC-seq
8
DNase-seq
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
Assay category
16
DNA accessibility
14
DNA binding
7
Transcription
1
3D chromatin structure
Target of assay
8
histone
8
histone modification
6
RNA binding protein
6
transcription factor
4
broad histone mark
4
narrow histone mark
Date released
August, 2017
15
June, 2019
5
October, 2018
4
July, 2019
3
October, 2019
2
April, 2018
2
August, 2021
2
July, 2018
1
February, 2021
1
January, 2018
1
November, 2018
1
November, 2020
1
October, 2017
Available data
55
bam
38
bigWig
29
bed narrowPeak
29
fastq
25
bigBed narrowPeak
16
bed bed3+
9
tsv
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
38
Homo sapiens
Biosample type
22
primary cell
12
tissue
4
in vitro differentiated cells
Organ
445
liver
229
pancreas
217
brain
208
epithelium
155
heart
120
kidney
97
vasculature
92
blood vessel
87
limb
51
musculature of body
38
connective tissue
31
artery
28
blood
28
bodily fluid
27
nerve
18
ureter
15
embryo
15
vein
13
adipose tissue
13
spleen
6
eye
1
pituitary gland
Project
38
AMP
Genome assembly (visualization)
37
hg19
31
GRCh38
Lab
36
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
August, 2017
December, 2018
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
Hi-C
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic stellate cell
4
brain pericyte
1
1
osteoblast
1
1
+ See 2 more…
tissue
omental fat pad
3
1
2
1
subcutaneous adipose tissue
2
1
adipose tissue
2
in vitro differentiated cells
adipocyte
3
osteoblast
1
See all biosamples
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