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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
72
ChIP-seq
71
ATAC-seq
66
single cell RNA-seq
47
WGBS
Assay category
72
DNA binding
71
DNA accessibility
66
Transcription
47
DNA methylation
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
80
May, 2022
35
September, 2018
33
July, 2018
29
April, 2018
29
August, 2017
19
December, 2017
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
3
August, 2018
3
September, 2020
1
June, 2018
Available data
240
bam
222
bigWig
176
fastq
150
bed narrowPeak
80
zippedFastqFolder
77
tsv
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
256
Homo sapiens
Biosample type
237
primary cell
19
in vitro differentiated cells
Organ
460
liver
373
pancreas
256
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
24
spleen
23
embryo
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
160
AMP
96
HPAP
Genome assembly (visualization)
153
GRCh38
145
hg19
Lab
160
AMP-T2D consortium
96
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
assay_title!
total RNA-seq
month_released!
March, 2020
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
primary cell
pancreatic alpha cell
13
35
12
31
pancreatic beta cell
13
23
12
16
pancreatic acinar cell
8
9
9
pancreatic ductal cell
13
4
9
pancreatic delta cell
11
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in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
See all biosamples
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