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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
total RNA-seq
5
ATAC-seq
4
RRBS
4
WGBS
3
DNase-seq
1
FAIRE-seq
Assay category
181
DNA binding
9
DNA accessibility
8
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
324
November, 2017
198
August, 2017
94
December, 2017
88
November, 2018
58
October, 2018
48
July, 2018
47
September, 2018
45
February, 2021
44
April, 2018
35
December, 2018
25
January, 2019
25
September, 2020
24
February, 2018
18
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
198
fastq
193
bam
183
bigWig
142
bed narrowPeak
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
191
Homo sapiens
Biosample type
86
tissue
58
primary cell
54
in vitro differentiated cells
Organ
79
pancreas
72
connective tissue
29
epithelium
28
liver
18
adipose tissue
2
musculature of body
Project
198
AMP
Genome assembly (visualization)
166
hg19
160
GRCh38
Lab
198
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
month_released!
April, 2019
BIOSAMPLE
ASSAY
198 results
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Clear Filters
ChIP-seq
ATAC-seq
RRBS
WGBS
DNase-seq
FAIRE-seq
tissue
liver
25
1
1
islet of Langerhans
22
1
1
pancreas
14
white adipose tissue
12
adipose tissue
2
3
+ See 3 more…
primary cell
skeletal muscle myoblast
15
1
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
53
1
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