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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
8
DNase-seq
5
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
61
DNA binding
9
DNA accessibility
5
DNA methylation
1
Transcription
Target of assay
61
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
control
Date released
265
November, 2017
167
August, 2017
76
November, 2018
73
December, 2017
48
July, 2018
47
September, 2018
45
February, 2021
44
April, 2018
31
October, 2018
28
December, 2018
25
September, 2020
18
May, 2022
16
February, 2018
15
January, 2019
14
October, 2017
7
August, 2020
5
January, 2018
5
September, 2017
4
August, 2018
3
June, 2018
1
March, 2019
Available data
76
fastq
75
bam
74
bigWig
69
bed narrowPeak
69
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
csv
Organism
76
Homo sapiens
Biosample type
58
cell line
17
tissue
1
primary cell
Organ
53
liver
12
blood
12
bodily fluid
7
pancreas
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
76
AMP
Genome assembly (visualization)
73
GRCh38
67
hg19
Lab
76
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
organ_slims!
spleen
target.investigated_as!
control
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
12
tissue
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
omental fat pad
1
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primary cell
pancreatic cell
1
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