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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 857ChIP-seq
  • total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 857DNA binding
  • 134Transcription
  • 102DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 198August, 2017
  • 94December, 2017
  • 88November, 2018
  • 58October, 2018
  • 48July, 2018
  • 47September, 2018
  • 45February, 2021
  • 44April, 2018
  • 35December, 2018
  • 25January, 2019
  • 25September, 2020
  • 24February, 2018
  • 18May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2110bam
  • 1891bigWig
  • 1817bed narrowPeak
  • 1121fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 285tsv
  • 271bed bed3+
  • 153zippedFastqFolder
  • 102txt
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1114Homo sapiens
Biosample type
  • 422cell line
  • 289primary cell
  • 280tissue
  • 126in vitro differentiated cells
  • 4stem cell
Organ
  • 460liver
  • 293pancreas
  • 176epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 24spleen
  • 23embryo
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1044AMP
  • 77HPAP
Genome assembly (visualization)
  • 869hg19
  • 812GRCh38
  • 5hg18
Lab
  • 1024AMP-T2D consortium
  • 77Klaus Kaestner, Upenn
  • 18Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

1121 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG236011
GM1287860
primary cell
Langerhans cell3427
pancreatic alpha cell1312136
pancreatic beta cell131210
pancreatic ductal cell1394
pancreatic endocrine cell23
tissue
liver67121
islet of Langerhans2862011
body of pancreas33422
spleen20121
pancreas1621
in vitro differentiated cells
adipocyte531
pancreatic endoderm181
hepatocyte15
definitive endodermal cell81
primitive gut cell81
stem cell
hESC31
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