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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • total RNA-seq
  • 211single cell RNA-seq
  • 31pCHi-C
  • 18small RNA-seq
  • 14ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 229Transcription
  • 14DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 98August, 2021
  • 49April, 2018
  • 48July, 2018
  • 32March, 2020
  • 21July, 2019
  • 14February, 2021
  • 12February, 2023
  • 4December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1May, 2020
Available data
  • 2110bam
  • 1891bigWig
  • 1817bed narrowPeak
  • 1121fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 285tsv
  • 271bed bed3+
  • 153zippedFastqFolder
  • 102txt
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 285Homo sapiens
Biosample type
  • 151tissue
  • 120primary cell
  • 6cell line
  • 4in vitro differentiated cells
  • 4stem cell
Organ
  • 96heart
  • 91pancreas
  • 78epithelium
  • 13kidney
  • 9brain
  • 9connective tissue
  • 7blood vessel
  • 7vasculature
  • 5liver
  • 4adipose tissue
  • 3musculature of body
  • 2artery
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 279AMP
  • 6HPAP
Genome assembly (visualization)
  • 126hg19
  • 124GRCh38
Lab
  • 279AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
Audit category:
  • 22inconsistent ontology term
  • 9audit script error
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

285 results

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Clear Filters
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
WGBS
snDrop-seq
RNA microarray
tissue
heart left ventricle181
right cardiac atrium181
heart right ventricle171
left cardiac atrium18
islet of Langerhans61
primary cell
pancreatic alpha cell126
pancreatic acinar cell12
pancreatic beta cell12
pancreatic delta cell11
pancreatic ductal cell10
cell line
EndoC_BH11
HepG21
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)21
embryonic stem cell1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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