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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
total RNA-seq
5
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
5
Transcription
4
DNA accessibility
Date released
89
February, 2021
3
February, 2023
1
May, 2022
1
October, 2022
Available data
2107
bam
1888
bigWig
1753
bed narrowPeak
1118
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
282
tsv
271
bed bed3+
153
zippedFastqFolder
94
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
bedpe
1
tagAlign bed3+
1
vcf
Organism
93
Homo sapiens
Biosample type
90
tissue
3
in vitro differentiated cells
1
cell line
Organ
84
bone element
5
kidney
1
musculature of body
Project
94
AMP
Genome assembly (visualization)
4
hg19
Lab
91
AMP-T2D consortium
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
assay_title!
total RNA-seq
files.file_type!
bedpe
lab.title!
Katalin Susztak, Upenn
month_released!
June, 2018
BIOSAMPLE
ASSAY
94 results
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RNA microarray
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
5
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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