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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
13
Transcription
4
DNA accessibility
Date released
8
August, 2021
5
February, 2021
3
February, 2023
1
May, 2022
1
October, 2022
Available data
1658
bed narrowPeak
1645
bigWig
1582
bam
966
bigBed narrowPeak
794
fastq
325
tagAlign
300
bed broadPeak
263
bigBed broadPeak
241
bed bed3+
204
tsv
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
18
txt
17
hic
8
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
17
Homo sapiens
Biosample type
14
tissue
3
in vitro differentiated cells
1
cell line
Organ
bone element
13
kidney
1
musculature of body
Project
18
AMP
Genome assembly (visualization)
4
hg19
Lab
8
Katalin Susztak, Upenn
7
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
1
inconsistent ontology term
assay_title!
total RNA-seq
organ_slims!
bone element
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
18 results
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Clear Filters
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
13
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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