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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 376ChIP-seq
  • total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 376DNA binding
  • 27Transcription
  • 22DNA accessibility
  • 13D chromatin structure
Target of assay
  • 229transcription factor
  • 82recombinant protein
  • 76control
  • 69histone
  • 69histone modification
  • 38broad histone mark
  • 31narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 61August, 2017
  • 50November, 2018
  • 46September, 2018
  • 35December, 2017
  • 25July, 2018
  • 15October, 2018
  • 8October, 2017
  • 7January, 2019
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 426fastq
  • 424bam
  • 346bigWig
  • 283bed narrowPeak
  • 244bigBed narrowPeak
  • 27tsv
  • 17bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 420Homo sapiens
Biosample type
  • 222cell line
  • 114tissue
  • 87primary cell
  • 3in vitro differentiated cells
Organ
  • 257liver
  • 102pancreas
  • 50epithelium
  • 32connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
Project
  • 426AMP
Genome assembly (visualization)
  • 344hg19
  • 341GRCh38
Lab
  • 425AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

426 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG22051
GM1287816
tissue
liver501
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
islet of Langerhans61
primary cell
pancreatic endocrine cell23
pancreatic ductal cell1324
pancreatic acinar cell843
pancreatic beta cell24
pancreatic alpha cell13
in vitro differentiated cells
adipocyte21
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