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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 133ChIP-seq
  • total RNA-seq
  • 28single cell RNA-seq
  • 26ATAC-seq
  • 5WGBS
Assay category
  • 133DNA binding
  • 28Transcription
  • 26DNA accessibility
  • 5DNA methylation
Target of assay
  • 104transcription factor
  • 26control
  • 18RNA binding protein
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 32December, 2018
  • 27October, 2018
  • 18May, 2022
  • 17April, 2018
  • 17November, 2018
  • 13August, 2017
  • 8January, 2019
  • 8July, 2018
  • 6October, 2017
  • 4December, 2017
  • 2September, 2020
  • 1June, 2018
Available data
  • 190fastq
  • 188bam
  • 144bigWig
  • 126bed narrowPeak
  • 102bigBed narrowPeak
  • 26tsv
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 192Homo sapiens
Biosample type
  • 88cell line
  • 76tissue
  • 28primary cell
Organ
  • 54pancreas
  • 49liver
  • 45blood
  • 45bodily fluid
  • 26adipose tissue
  • 26connective tissue
  • 18epithelium
  • 8spleen
Project
  • 190AMP
  • 2HPAP
Genome assembly (visualization)
  • 159hg19
  • 144GRCh38
Lab
  • 172AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
  • 2Klaus Kaestner, Upenn
Audit category:
  • 7missing controlled_by
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

192 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
cell line
GM1287845
HepG243
tissue
islet of Langerhans18
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
primary cell
mesenchymal cell4
pancreatic alpha cell4
pancreatic beta cell4
pancreatic cell4
pancreatic delta cell3
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