Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
51
single cell RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
69
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
89
bigWig
86
bam
69
tsv
48
fastq
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
112
Homo sapiens
Biosample type
66
primary cell
46
tissue
Organ
41
epithelium
41
pancreas
15
heart
14
brain
8
musculature of body
7
connective tissue
7
vasculature
6
blood vessel
6
kidney
6
liver
5
limb
3
adipose tissue
1
artery
1
eye
1
pericardium
Project
112
AMP
Genome assembly (visualization)
95
hg19
83
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
total RNA-seq
lab.title!
KPMP
month_released!
September, 2020
BIOSAMPLE
ASSAY
112 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 27 more…
tissue
heart left ventricle
1
4
2
gastrocnemius medialis
4
right lobe of liver
2
1
aorta
2
body of pancreas
2
+ See 24 more…
See all biosamples
Download