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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
49
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
49
DNA binding
8
DNA accessibility
6
DNA methylation
3
Transcription
Target of assay
32
histone
32
histone modification
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
51
August, 2017
5
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
30
bigWig
28
bam
25
fastq
13
bed narrowPeak
10
bigBed narrowPeak
7
tagAlign
6
bed bed3+
4
tsv
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
68
Homo sapiens
Biosample type
67
tissue
1
in vitro differentiated cells
1
primary cell
Organ
496
pancreas
494
liver
363
epithelium
301
heart
238
brain
189
kidney
175
connective tissue
153
vasculature
148
blood vessel
98
limb
97
bone element
84
musculature of body
76
artery
69
adipose tissue
63
blood
63
bodily fluid
41
eye
27
nerve
20
lung
20
vein
18
ureter
17
spleen
16
embryo
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
30
hg19
28
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
control
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
31
3
white adipose tissue
12
adipose tissue
1
3
3
1
omental fat pad
3
1
1
2
subcutaneous adipose tissue
2
1
1
1
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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