Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
534
ChIP-seq
total RNA-seq
6
DNase-seq
5
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
534
DNA binding
9
DNA accessibility
7
DNA methylation
4
Transcription
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
51
May, 2020
6
July, 2019
6
October, 2019
4
August, 2021
3
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
Available data
522
bam
460
fastq
429
bigWig
407
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
560
Homo sapiens
Biosample type
365
cell line
171
tissue
15
in vitro differentiated cells
9
primary cell
Organ
560
liver
390
pancreas
288
epithelium
281
heart
253
brain
204
connective tissue
175
vasculature
169
blood vessel
152
kidney
115
limb
96
bone element
92
adipose tissue
90
musculature of body
85
artery
61
blood
61
bodily fluid
42
eye
38
nerve
24
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
560
AMP
Genome assembly (visualization)
431
hg19
372
GRCh38
Lab
560
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
total RNA-seq
lab.title!
Klaus Kaestner, Upenn
month_released!
October, 2017
BIOSAMPLE
ASSAY
560 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
1
1
1
2
tissue
liver
145
2
3
1
1
1
1
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download