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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
5
STARR-seq
4
ChIP-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
4
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
transcription factor
4
control
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
12
August, 2021
2
March, 2019
Available data
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
14
Homo sapiens
Biosample type
11
cell line
3
tissue
Organ
8
liver
3
pancreas
2
kidney
Project
14
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
1341
AMP-T2D consortium
232
Klaus Kaestner, Upenn
93
Katalin Susztak, Upenn
82
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
target.investigated_as!
histone
transcription factor
BIOSAMPLE
ASSAY
14 results
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STARR-seq
ChIP-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
2
4
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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