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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
Hi-C
4
DNase-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
95
DNA binding
51
DNA accessibility
6
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
RNA binding protein
Date released
47
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
6
August, 2021
6
July, 2019
June, 2019
3
March, 2020
2
November, 2017
Available data
120
bed narrowPeak
113
bam
83
bigWig
70
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
7
tsv
6
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
160
Homo sapiens
Biosample type
120
tissue
26
primary cell
14
cell line
Organ
542
liver
536
pancreas
367
epithelium
276
heart
236
brain
211
kidney
183
connective tissue
163
vasculature
160
blood vessel
97
bone element
87
adipose tissue
83
limb
82
artery
59
blood
59
bodily fluid
47
musculature of body
38
nerve
35
eye
25
spleen
22
vein
20
lung
14
embryo
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
160
AMP
Genome assembly (visualization)
120
GRCh38
93
hg19
Lab
160
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
total RNA-seq
month_released!
February, 2018
June, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
160 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
DNase-seq
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
4
36
tibial artery
23
1
2
aorta
13
4
1
2
1
thoracic aorta
15
1
ascending aorta
15
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
2
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
8
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