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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
129
DNA binding
94
Transcription
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
14
February, 2021
14
July, 2019
6
October, 2019
5
March, 2020
Available data
185
bed narrowPeak
149
bigWig
134
bam
96
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
312
Homo sapiens
Biosample type
298
tissue
14
cell line
Organ
602
liver
512
pancreas
360
epithelium
321
heart
294
kidney
269
brain
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
312
AMP
Genome assembly (visualization)
191
GRCh38
113
hg19
Lab
272
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
total RNA-seq
month_released!
July, 2018
organ_slims!
connective tissue
large intestine
BIOSAMPLE
ASSAY
312 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
heart
14
1
18
1
1
1
heart right ventricle
13
17
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
6
8
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