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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
73
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
73
DNA binding
7
DNA accessibility
6
DNA methylation
3
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
October, 2019
Available data
47
bam
44
fastq
29
bigWig
13
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
90
Homo sapiens
Biosample type
89
tissue
1
in vitro differentiated cells
1
primary cell
Organ
594
liver
522
pancreas
357
epithelium
310
heart
268
kidney
204
connective tissue
182
brain
125
vasculature
119
blood vessel
97
bone element
91
adipose tissue
87
musculature of body
69
blood
69
bodily fluid
59
artery
50
limb
35
eye
24
spleen
23
embryo
19
lung
18
ureter
12
skeleton
1
bone marrow
1
pericardium
1
thymus
Project
91
AMP
Genome assembly (visualization)
29
hg19
28
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
month_released!
March, 2020
October, 2019
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
1
2
subcutaneous adipose tissue
12
1
1
1
white adipose tissue
12
adipose tissue
2
3
2
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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