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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
82
DNA binding
9
DNA accessibility
Target of assay
54
transcription factor
13
control
13
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
13
December, 2017
9
February, 2018
8
January, 2021
2
January, 2018
Available data
83
fastq
82
bam
70
bigWig
68
bed narrowPeak
54
bigBed narrowPeak
3
bed bed3+
Organism
92
Homo sapiens
Biosample type
61
cell line
23
in vitro differentiated cells
8
primary cell
Organ
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
84
AMP
8
T1D
Genome assembly (visualization)
70
hg19
69
GRCh38
1
hg18
Lab
84
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
month_released!
March, 2023
organ_slims!
liver
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
60
1
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
peripheral blood mononuclear cell
8
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