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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
93
single cell RNA-seq
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
113
DNA binding
94
Transcription
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
84
histone
84
histone modification
50
broad histone mark
34
narrow histone mark
15
transcription factor
14
control
9
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
May, 2019
15
July, 2019
14
February, 2021
6
October, 2019
5
March, 2020
Available data
176
bed narrowPeak
140
bigWig
121
bam
96
tsv
79
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
300
Homo sapiens
Biosample type
277
tissue
14
cell line
9
primary cell
Organ
602
liver
547
pancreas
388
epithelium
300
heart
289
kidney
241
brain
210
connective tissue
125
vasculature
119
blood vessel
108
limb
97
bone element
93
adipose tissue
83
musculature of body
80
artery
69
blood
69
bodily fluid
42
eye
38
nerve
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
300
AMP
Genome assembly (visualization)
182
GRCh38
104
hg19
Lab
260
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
May, 2019
organ_slims!
spleen
BIOSAMPLE
ASSAY
300 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
36
2
heart
14
1
18
1
1
1
heart right ventricle
13
17
1
2
1
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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