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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
18
small RNA-seq
17
ATAC-seq
15
RRBS
12
WGBS
9
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
27
DNA methylation
21
Transcription
19
DNA accessibility
9
3D chromatin structure
Target of assay
3
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
48
bigWig
39
bam
23
bed bedMethyl
23
bigBed bedMethyl
21
tsv
8
fastq
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
1
bed broadPeak
1
bedpe
1
hic
Organism
76
Homo sapiens
Biosample type
51
tissue
25
primary cell
Organ
16
pancreas
15
epithelium
15
heart
14
brain
8
musculature of body
7
vasculature
6
blood vessel
6
kidney
6
liver
5
connective tissue
5
limb
3
adipose tissue
1
artery
1
eye
1
pericardium
Project
69
AMP
7
HPAP
Genome assembly (visualization)
50
hg19
44
GRCh38
Lab
64
AMP-T2D consortium
7
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
November, 2020
BIOSAMPLE
ASSAY
76 results
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Clear Filters
small RNA-seq
ATAC-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
islet of Langerhans
4
1
1
gastrocnemius medialis
4
right lobe of liver
2
1
aorta
2
+ See 24 more…
primary cell
pancreatic alpha cell
5
cerebellar granule cell
2
pancreatic beta cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 14 more…
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