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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
18
small RNA-seq
14
RRBS
11
ATAC-seq
10
WGBS
6
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
24
DNA methylation
21
Transcription
13
DNA accessibility
6
3D chromatin structure
Target of assay
3
control
Date released
400
November, 2017
322
August, 2017
239
August, 2021
233
October, 2019
217
May, 2021
211
June, 2019
174
May, 2022
156
February, 2021
151
May, 2020
94
December, 2017
88
November, 2018
80
April, 2019
77
February, 2023
74
October, 2018
70
May, 2019
57
July, 2019
49
April, 2018
48
July, 2018
47
September, 2018
47
September, 2023
45
March, 2020
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
43
bigWig
34
bam
21
bed bedMethyl
21
bigBed bedMethyl
21
tsv
7
fastq
5
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
64
Homo sapiens
Biosample type
42
tissue
22
primary cell
Organ
15
epithelium
15
heart
14
brain
11
pancreas
8
musculature of body
vasculature
6
blood vessel
6
kidney
6
liver
5
connective tissue
5
limb
3
adipose tissue
1
artery
1
eye
1
pericardium
Project
57
AMP
7
HPAP
Genome assembly (visualization)
42
hg19
39
GRCh38
Lab
57
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
assay_title!
total RNA-seq
organ_slims!
ovary
vasculature
BIOSAMPLE
ASSAY
64 results
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Clear Filters
small RNA-seq
RRBS
ATAC-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
1
2
4
gastrocnemius medialis
4
right lobe of liver
2
1
body of pancreas
2
frontal cortex
1
1
+ See 21 more…
primary cell
pancreatic alpha cell
5
cerebellar granule cell
2
pancreatic beta cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 11 more…
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