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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
8
DNase-seq
7
ATAC-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
190
DNA binding
16
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
92
histone
92
histone modification
69
transcription factor
58
broad histone mark
34
narrow histone mark
29
control
26
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
280
October, 2019
240
August, 2021
216
May, 2021
200
June, 2019
197
August, 2017
174
May, 2022
164
February, 2021
151
May, 2020
120
May, 2019
102
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
59
July, 2019
51
October, 2018
47
April, 2018
47
March, 2020
47
September, 2018
47
September, 2023
46
July, 2018
43
September, 2020
40
May, 2024
40
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
November, 2020
7
August, 2020
7
January, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
206
bam
183
bigWig
169
bed narrowPeak
169
bigBed narrowPeak
94
fastq
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
214
Homo sapiens
Biosample type
140
tissue
61
cell line
13
primary cell
Organ
53
liver
50
blood vessel
50
vasculature
30
brain
21
heart
16
pancreas
15
blood
15
bodily fluid
12
epithelium
9
spleen
7
limb
7
musculature of body
5
artery
5
kidney
1
adipose tissue
connective tissue
Project
207
AMP
7
HPAP
Genome assembly (visualization)
181
GRCh38
167
hg19
Lab
207
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
214 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 11 more…
cell line
HepG2
45
1
GM12878
15
primary cell
kidney epithelial cell
5
pancreatic alpha cell
5
pancreatic beta cell
2
pancreatic cell
1
See all biosamples
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