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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
total RNA-seq
21
ChIP-seq
6
snATAC-seq
3
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
106
Transcription
82
DNA accessibility
21
DNA binding
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
260
October, 2019
216
August, 2021
212
June, 2019
197
May, 2021
169
August, 2017
161
February, 2021
118
May, 2019
100
May, 2020
98
February, 2023
91
November, 2017
80
April, 2019
56
May, 2022
54
July, 2019
47
September, 2023
40
May, 2024
September, 2020
38
March, 2020
34
December, 2018
31
December, 2017
28
November, 2018
25
January, 2019
24
February, 2018
23
October, 2018
19
April, 2020
18
October, 2017
14
May, 2023
11
July, 2018
10
April, 2018
8
January, 2018
8
January, 2021
6
November, 2019
5
December, 2019
5
March, 2023
2
June, 2018
2
November, 2020
1
August, 2018
1
October, 2022
1
September, 2018
Available data
98
tsv
89
bed narrowPeak
64
xls
30
bam
20
tagAlign
15
bigWig
8
txt
2
bed bed3+
1
hic
Organism
215
Homo sapiens
Biosample type
178
tissue
35
in vitro differentiated cells
3
cell line
Organ
92
heart
81
kidney
liver
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
pancreas
2
artery
1
adipose tissue
Project
216
AMP
Genome assembly (visualization)
87
GRCh38
27
hg19
Lab
130
AMP-T2D consortium
79
Katalin Susztak, Upenn
4
Struan F.A. Grant, CHOP
3
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
September, 2020
organ_slims!
liver
pancreas
BIOSAMPLE
ASSAY
216 results
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Clear Filters
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HEK293T
2
Synthesized DNA
1
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