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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
single cell RNA-seq
total RNA-seq
77
ATAC-seq
43
ChIP-seq
10
MeRIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
DNase-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
153
Transcription
84
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
17
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
5
nucleotide modification
1
RNA binding protein
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
108
bed narrowPeak
98
tsv
64
xls
36
bam
33
bigWig
24
tagAlign
8
txt
6
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
vcf
Organism
303
Homo sapiens
Biosample type
230
tissue
35
in vitro differentiated cells
33
cell line
6
primary cell
Organ
128
kidney
92
heart
26
liver
13
pancreas
12
epithelium
7
connective tissue
6
blood vessel
6
vasculature
2
artery
1
adipose tissue
Project
257
AMP
47
KPMP
Genome assembly (visualization)
92
GRCh38
47
hg19
Lab
138
AMP-T2D consortium
79
Katalin Susztak, Upenn
47
KPMP
26
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
304 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
DNase-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
55
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
EndoC_BH1
6
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
osteoblast
1
1
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