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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
total RNA-seq
10
MeRIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
24
DNA binding
2
DNA accessibility
Target of assay
16
histone
16
histone modification
13
control
8
broad histone mark
8
narrow histone mark
5
nucleotide modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
26
bam
24
fastq
18
bed narrowPeak
17
bigWig
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
36
Homo sapiens
Biosample type
24
in vitro differentiated cells
6
cell line
4
tissue
2
primary cell
Organ
10
pancreas
9
embryo
6
epithelium
2
connective tissue
Project
36
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
26
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
2
inconsistent control read length
assay_title!
total RNA-seq
month_released!
November, 2019
BIOSAMPLE
ASSAY
36 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
pancreatic endoderm
9
definitive endodermal cell
3
embryonic stem cell
3
endocrine cell
3
posterior foregut
3
+ See 1 more…
cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
primary cell
osteoblast
1
1
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