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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
41
DNA accessibility
18
Transcription
6
DNA methylation
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
406
November, 2017
322
August, 2017
278
October, 2019
217
May, 2021
183
June, 2019
174
May, 2022
156
February, 2021
153
August, 2021
151
May, 2020
99
May, 2019
94
December, 2017
88
November, 2018
76
February, 2023
74
October, 2018
49
April, 2018
49
July, 2019
48
July, 2018
47
September, 2018
47
September, 2023
44
March, 2020
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
April, 2019
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
June, 2018
1
August, 2022
Available data
89
txt
45
fastq
14
tsv
13
bam
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bigWig
2
tagAlign
Organism
156
Homo sapiens
Biosample type
101
tissue
47
primary cell
4
cell line
4
in vitro differentiated cells
Organ
92
bone element
14
artery
14
blood vessel
heart
14
vasculature
8
kidney
8
skeleton
6
connective tissue
6
epithelium
6
limb
6
pancreas
3
liver
Project
111
AMP
45
HPAP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
111
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
month_released!
June, 2018
organ_slims!
heart
spinal cord
BIOSAMPLE
ASSAY
156 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
ChIP-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
cell line
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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