Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
14
DNase-seq
12
ATAC-seq
6
ChIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
26
DNA accessibility
6
DNA binding
Target of assay
2
RNA binding protein
2
control
2
histone
2
histone modification
2
narrow histone mark
2
transcription factor
Date released
80
May, 2022
35
September, 2018
33
April, 2018
33
July, 2018
32
October, 2019
29
August, 2017
20
June, 2019
20
May, 2021
19
December, 2017
15
November, 2019
13
February, 2023
8
July, 2019
7
August, 2020
6
August, 2021
6
February, 2021
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
4
March, 2020
3
August, 2018
3
October, 2022
3
September, 2020
1
December, 2019
1
June, 2018
Available data
30
bed narrowPeak
20
bam
18
bigBed narrowPeak
18
bigWig
14
bed bed3+
14
bed broadPeak
14
bigBed broadPeak
Organism
32
Homo sapiens
Biosample type
20
primary cell
12
tissue
1
cell line
Organ
81
kidney
71
heart
43
musculature of body
42
vasculature
40
blood vessel
37
artery
34
eye
33
epithelium
32
limb
31
brain
28
connective tissue
18
pancreas
18
ureter
4
bone element
4
skeleton
2
adipose tissue
2
liver
Project
33
AMP
Genome assembly (visualization)
24
hg19
18
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
total RNA-seq
organ_slims!
intestine
BIOSAMPLE
ASSAY
33 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
epithelial cell of proximal tubule
1
3
retinal pigment epithelial cell
1
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
brain microvascular endothelial cell
1
+ See 7 more…
tissue
pigmented layer of retina
12
cell line
EndoC_BH1
1
See all biosamples
Download