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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
25
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
27
DNA methylation
25
DNA binding
21
Transcription
8
3D chromatin structure
8
DNA accessibility
Target of assay
14
transcription factor
7
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
63
bam
62
bigWig
28
bed narrowPeak
25
fastq
23
bed bedMethyl
23
bigBed bedMethyl
23
bigBed narrowPeak
21
tsv
4
bed bed3+
4
hdf5
Organism
89
Homo sapiens
Biosample type
53
tissue
18
cell line
18
primary cell
Organ
18
blood
18
bodily fluid
15
heart
14
brain
8
epithelium
8
musculature of body
7
spleen
7
vasculature
6
blood vessel
6
kidney
6
liver
5
connective tissue
5
limb
4
pancreas
3
adipose tissue
1
artery
1
eye
1
pericardium
Project
89
AMP
Genome assembly (visualization)
68
hg19
56
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
November, 2020
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
1
4
2
spleen
7
gastrocnemius medialis
4
right lobe of liver
2
1
aorta
2
+ See 25 more…
cell line
GM12878
18
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 12 more…
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