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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
114
ATAC-seq
82
ChIP-seq
49
single cell RNA-seq
1
pCHi-C
Assay category
114
DNA accessibility
82
DNA binding
49
Transcription
Target of assay
59
histone
59
histone modification
42
narrow histone mark
23
control
17
broad histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
189
bam
166
bigWig
95
fastq
73
bed narrowPeak
50
tagAlign
49
tsv
14
bigBed narrowPeak
1
csv
Organism
246
Homo sapiens
Biosample type
195
primary cell
50
tissue
1
cell line
Organ
83
pancreas
68
epithelium
51
liver
2
connective tissue
Project
246
AMP
Genome assembly (visualization)
166
hg19
113
GRCh38
Lab
246
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
32
missing controlled_by
assay_title!
total RNA-seq
month_released!
July, 2019
BIOSAMPLE
ASSAY
246 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic ductal cell
4
13
3
pancreatic acinar cell
3
8
5
pancreatic beta cell
4
9
+ See 39 more…
tissue
liver
50
cell line
HepG2
1
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