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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
single cell RNA-seq
13
ChIP-seq
1
ATAC-seq
1
Hi-C
total RNA-seq
Assay category
33
Transcription
13
DNA binding
1
3D chromatin structure
1
DNA accessibility
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
80
May, 2022
35
September, 2018
33
April, 2018
33
July, 2018
32
October, 2019
29
August, 2017
20
June, 2019
20
May, 2021
19
December, 2017
15
November, 2019
13
February, 2023
8
July, 2019
7
August, 2020
6
August, 2021
6
February, 2021
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
March, 2020
3
August, 2018
3
October, 2022
3
September, 2020
1
December, 2019
1
June, 2018
Available data
47
bam
44
bigWig
33
fastq
33
tsv
12
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
48
Homo sapiens
Biosample type
33
primary cell
15
cell line
Organ
72
pancreas
48
epithelium
3
connective tissue
1
adipose tissue
Project
48
AMP
Genome assembly (visualization)
46
hg19
45
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
March, 2020
BIOSAMPLE
ASSAY
48 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic ductal cell
3
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cell line
EndoC_BH1
13
1
1
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