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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
143
ChIP-seq
38
DNase-seq
14
ATAC-seq
7
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
143
DNA binding
52
DNA accessibility
7
DNA methylation
4
3D chromatin structure
3
Transcription
Target of assay
85
histone
85
histone modification
54
broad histone mark
41
control
31
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
70
October, 2019
57
August, 2017
33
June, 2019
23
October, 2018
8
July, 2019
7
May, 2019
6
February, 2021
3
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
November, 2018
1
November, 2019
1
October, 2017
Available data
157
bam
117
bigWig
105
bed narrowPeak
94
bigBed narrowPeak
44
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
8
tagAlign
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
213
Homo sapiens
Biosample type
212
tissue
1
in vitro differentiated cells
1
primary cell
Organ
602
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
214
AMP
Genome assembly (visualization)
122
hg19
120
GRCh38
Lab
214
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
214 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 17 more…
in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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