Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
94
single cell RNA-seq
total RNA-seq
63
DNase-seq
48
ATAC-seq
9
Hi-C
9
WGBS
7
RRBS
5
pCHi-C
3
small RNA-seq
1
snATAC-seq
Assay category
173
DNA binding
112
DNA accessibility
97
Transcription
16
DNA methylation
9
3D chromatin structure
Target of assay
130
histone
130
histone modification
77
broad histone mark
53
narrow histone mark
26
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
78
June, 2019
57
April, 2019
40
May, 2024
36
February, 2023
28
May, 2019
26
August, 2017
23
July, 2019
14
February, 2021
9
March, 2020
6
October, 2019
2
May, 2022
1
January, 2018
Available data
251
bed narrowPeak
219
bigWig
195
bam
141
bigBed narrowPeak
100
tsv
76
bed broadPeak
64
bed bed3+
63
bigBed broadPeak
21
tagAlign
12
bed bedMethyl
12
bigBed bedMethyl
5
bedpe bed3+
5
hic
2
fastq
1
txt
Organism
412
Homo sapiens
Biosample type
376
tissue
22
primary cell
14
cell line
Organ
602
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
412
AMP
Genome assembly (visualization)
246
GRCh38
188
hg19
Lab
372
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
15
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
412 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
RRBS
pCHi-C
small RNA-seq
snATAC-seq
tissue
heart left ventricle
35
18
3
2
1
4
1
1
left cardiac atrium
40
18
1
coronary artery
5
2
36
heart
14
1
18
1
1
1
heart right ventricle
13
17
1
1
2
1
+ See 17 more…
primary cell
cardiac fibroblast
5
3
1
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
cell line
smooth muscle cell of the coronary artery
6
8
See all biosamples
Download