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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
45
ATAC-seq
33
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
49
DNA accessibility
33
DNA binding
2
Transcription
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
transcription factor
1
RNA binding protein
Date released
35
February, 2023
30
October, 2019
10
February, 2021
4
May, 2019
2
August, 2021
2
June, 2019
1
July, 2019
1
March, 2020
Available data
69
bed narrowPeak
43
bam
26
bigWig
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
3
tsv
2
tagAlign
Organism
85
Homo sapiens
Biosample type
75
tissue
10
cell line
Organ
530
pancreas
384
epithelium
304
heart
284
kidney
266
brain
264
liver
170
connective tissue
166
vasculature
161
blood vessel
115
limb
97
bone element
90
musculature of body
80
artery
76
adipose tissue
41
eye
38
nerve
22
vein
20
embryo
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
69
GRCh38
34
hg19
Lab
85
AMP-T2D consortium
assay_title!
total RNA-seq
organ_slims!
lung
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
85 results
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ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
36
4
2
tibial artery
1
23
2
islet of Langerhans
4
pulmonary artery
2
ovary
1
cell line
smooth muscle cell of the coronary artery
8
2
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