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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 99ChIP-seq
  • total RNA-seq
  • 46ATAC-seq
  • 9DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 99DNA binding
  • 56DNA accessibility
  • 6Transcription
  • 53D chromatin structure
  • 2DNA methylation
Target of assay
  • 70histone
  • 70histone modification
  • 45broad histone mark
  • 25narrow histone mark
  • 21control
  • 8transcription factor
  • 4RNA binding protein
Date released
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 14February, 2021
  • 6August, 2021
  • 6July, 2019
  • 5June, 2019
  • 3March, 2020
  • 3November, 2017
Available data
  • 129bed narrowPeak
  • 122bam
  • 92bigWig
  • 79bigBed narrowPeak
  • 13bed broadPeak
  • 13bigBed broadPeak
  • 11bed bed3+
  • 7tsv
  • 6tagAlign
  • 3fastq
  • 3hic
  • 2bedpe bed3+
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 169Homo sapiens
Biosample type
  • 126tissue
  • 29primary cell
  • 14cell line
Organ
  • 602liver
  • 549pancreas
  • 393epithelium
  • 321heart
  • 294kidney
  • 269brain
  • 210connective tissue
  • 175vasculature
  • 169blood vessel
  • 115limb
  • 97bone element
  • 93adipose tissue
  • 90musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 38nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 20lung
  • 18ureter
  • 12skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 169AMP
Genome assembly (visualization)
  • 129GRCh38
  • 101hg19
Lab
  • 169AMP-T2D consortium
Audit category:
  • 1audit script error
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

169 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery5362
tibial artery2312
aorta134121
ascending aorta161
thoracic aorta161
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
cell line
smooth muscle cell of the coronary artery68
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