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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
total RNA-seq
32
ChIP-seq
7
ATAC-seq
5
RRBS
2
Hi-C
2
pCHi-C
2
small RNA-seq
1
DNase-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
32
DNA binding
9
DNA accessibility
5
DNA methylation
3
Transcription
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
86
February, 2021
26
August, 2017
11
June, 2019
4
February, 2023
3
July, 2019
3
March, 2020
2
May, 2022
1
January, 2018
1
May, 2021
Available data
85
txt
25
bigWig
24
bed narrowPeak
15
bam
15
tagAlign
14
bed broadPeak
9
bigBed narrowPeak
4
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
Organism
137
Homo sapiens
Biosample type
123
tissue
14
primary cell
Organ
602
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
136
AMP
1
T1D
Genome assembly (visualization)
37
hg19
13
GRCh38
Lab
136
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
92
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
organ_slims!
gonad
limb
BIOSAMPLE
ASSAY
137 results
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RNA microarray
ChIP-seq
ATAC-seq
RRBS
Hi-C
pCHi-C
small RNA-seq
DNase-seq
single cell RNA-seq
snATAC-seq
tissue
bone element
84
skeletal muscle tissue
22
1
4
1
1
1
psoas muscle
2
1
acetabular part of hip bone
1
distal epiphysis
1
+ See 4 more…
primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
megakaryocyte
1
See all biosamples
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