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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
total RNA-seq
28
ATAC-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
1
GRO-seq
1
RRBS
Assay category
44
DNA binding
35
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
30
histone
30
histone modification
17
narrow histone mark
13
broad histone mark
10
control
4
transcription factor
1
RNA binding protein
Date released
28
October, 2019
27
February, 2023
13
December, 2017
9
February, 2018
7
June, 2019
1
January, 2018
1
July, 2019
1
March, 2020
Available data
60
bed narrowPeak
49
bam
36
bigWig
23
fastq
19
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
87
Homo sapiens
Biosample type
37
tissue
27
primary cell
23
in vitro differentiated cells
Organ
602
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
66
hg19
33
GRCh38
1
hg18
Lab
87
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
organ_slims!
large intestine
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
GRO-seq
RRBS
tissue
retina
15
3
pigmented layer of retina
12
islet of Langerhans
2
1
4
primary cell
endothelial cell of umbilical vein
17
2
2
1
retinal pigment epithelial cell
3
1
1
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
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