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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 134ChIP-seq
  • 93single cell RNA-seq
  • total RNA-seq
  • 47ATAC-seq
  • 30DNase-seq
  • 8WGBS
  • 3Hi-C
  • 3pCHi-C
  • 2RRBS
  • 1small RNA-seq
Assay category
  • 134DNA binding
  • 94Transcription
  • 77DNA accessibility
  • 10DNA methylation
  • 33D chromatin structure
Target of assay
  • 97histone
  • 97histone modification
  • 57broad histone mark
  • 40narrow histone mark
  • 20control
  • 17transcription factor
  • 11RNA binding protein
Date released
  • 92August, 2021
  • 57April, 2019
  • 40May, 2024
  • 36February, 2023
  • 35June, 2019
  • 21May, 2019
  • 15July, 2019
  • 14February, 2021
  • 6October, 2019
  • 5March, 2020
Available data
  • 191bed narrowPeak
  • 155bigWig
  • 142bam
  • 96tsv
  • 94bigBed narrowPeak
  • 30bed bed3+
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 321Homo sapiens
Biosample type
  • 298tissue
  • 14cell line
  • 9primary cell
Organ
  • 602liver
  • 549pancreas
  • 393epithelium
  • 321heart
  • 294kidney
  • 269brain
  • 210connective tissue
  • 175vasculature
  • 169blood vessel
  • 115limb
  • 97bone element
  • 93adipose tissue
  • 90musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 38nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 20lung
  • 18ureter
  • 12skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 321AMP
Genome assembly (visualization)
  • 197GRCh38
  • 119hg19
Lab
  • 281AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 6inconsistent ontology term
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

321 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle3518234111
left cardiac atrium40181
coronary artery5362
heart14118111
heart right ventricle13171211
cell line
smooth muscle cell of the coronary artery68
primary cell
cardiac fibroblast531
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