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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81DNase-seq
  • 75ATAC-seq
  • 64single cell RNA-seq
  • total RNA-seq
  • 52ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1FAIRE-seq
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • 163DNA accessibility
  • 65Transcription
  • 52DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 81August, 2021
  • 81June, 2019
  • 47September, 2023
  • 24October, 2019
  • 23April, 2019
  • 14May, 2023
  • 8February, 2021
  • 6July, 2019
  • 5May, 2019
  • 3December, 2019
  • 2March, 2020
Available data
  • 183bed narrowPeak
  • 133bam
  • 120bigWig
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 13tsv
  • 13txt
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 294Homo sapiens
Biosample type
  • 249tissue
  • 30primary cell
  • 15cell line
Organ
  • 602liver
  • 549pancreas
  • 393epithelium
  • 321heart
  • 294kidney
  • 269brain
  • 210connective tissue
  • 175vasculature
  • 169blood vessel
  • 115limb
  • 97bone element
  • 93adipose tissue
  • 90musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 38nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 20lung
  • 18ureter
  • 12skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 247AMP
  • 47KPMP
Genome assembly (visualization)
  • 194GRCh38
  • 118hg19
Lab
  • 152AMP-T2D consortium
  • 93Katalin Susztak, Upenn
  • 47KPMP
  • 2Bing Ren, UCSD
Audit category:
  • 20inconsistent ontology term
  • 7audit script error
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

294 results

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Clear Filters
DNase-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney137564276111
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule1101
kidney epithelial cell151
kidney tubule cell3
glomerular visceral epithelial cell2
kidney glomerular epithelial cell2
cell line
RCC 7860 HIF1a re-expression4
RCC 7860 vector31
RCC 7860 HIF2a over-expression3
HEK293T2
RCC 7860 VHL1
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