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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
36
DNase-seq
8
ATAC-seq
total RNA-seq
4
Hi-C
1
RRBS
1
WGBS
Assay category
51
DNA binding
44
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
narrow histone mark
Date released
52
October, 2019
32
June, 2019
6
February, 2021
6
July, 2019
5
May, 2019
Available data
96
bam
78
bed narrowPeak
73
bigWig
70
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
101
Homo sapiens
Biosample type
101
tissue
Organ
542
liver
476
pancreas
344
epithelium
281
heart
279
kidney
177
connective tissue
152
brain
149
vasculature
144
blood vessel
100
limb
97
bone element
81
adipose tissue
79
artery
77
musculature of body
68
blood
68
bodily fluid
39
eye
30
nerve
23
spleen
20
lung
18
ureter
16
vein
15
embryo
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
101
AMP
Genome assembly (visualization)
79
GRCh38
79
hg19
Lab
101
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
WGBS
tissue
tibial nerve
27
2
1
tibial artery
19
2
1
muscle of leg
5
13
1
muscle of arm
17
gastrocnemius medialis
4
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