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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • total RNA-seq
  • 218ChIP-seq
  • 152ATAC-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 8DNase-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 218DNA binding
  • 173DNA accessibility
  • 82Transcription
  • 53DNA methylation
  • 93D chromatin structure
Target of assay
  • 151histone
  • 151histone modification
  • 78broad histone mark
  • 73narrow histone mark
  • 53control
  • 19transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 99August, 2017
  • 98May, 2022
  • 51October, 2018
  • 46September, 2018
  • 39April, 2018
  • 37July, 2018
  • 35November, 2019
  • 20May, 2021
  • 18October, 2019
  • 14February, 2023
  • 11September, 2017
  • 10November, 2020
  • 9March, 2020
  • 8January, 2021
  • 7August, 2020
  • 7November, 2018
  • 6February, 2021
  • 5March, 2019
  • 5October, 2017
  • 4July, 2019
  • 4June, 2019
  • 3August, 2018
  • 3August, 2021
  • 3October, 2022
  • 3September, 2020
  • 2May, 2019
  • 1August, 2022
  • 1June, 2018
Available data
  • 359bam
  • 299bigWig
  • 293fastq
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 91tsv
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 541Homo sapiens
Biosample type
  • 265primary cell
  • 222tissue
  • 59cell line
  • 3in vitro differentiated cells
Organ
  • 602liver
  • 549pancreas
  • 393epithelium
  • 321heart
  • 294kidney
  • 269brain
  • 210connective tissue
  • 175vasculature
  • 169blood vessel
  • 115limb
  • 97bone element
  • 93adipose tissue
  • 90musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 38nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 20lung
  • 18ureter
  • 12skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 425AMP
  • 99HPAP
  • 25T1D
Genome assembly (visualization)
  • 334hg19
  • 311GRCh38
Lab
  • 394AMP-T2D consortium
  • 99Klaus Kaestner, Upenn
  • 39Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 48inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

549 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell133512311
pancreatic beta cell132312161
pancreatic acinar cell89121
pancreatic ductal cell13410
pancreatic endocrine cell23
tissue
islet of Langerhans50586743111
body of pancreas354242
pancreas162412111
endocrine pancreas16
cell line
EndoC_BH115196121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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