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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • total RNA-seq
  • 366single cell RNA-seq
  • 87RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 7ChIP-seq
  • 5STARR-seq
  • 3snDrop-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snATAC-seq
Assay category
  • 388Transcription
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 6control
  • 6histone
  • 6histone modification
  • 5nucleotide modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 112August, 2021
  • 105February, 2021
  • 49April, 2018
  • 48July, 2018
  • 47September, 2023
  • 40September, 2020
  • 34May, 2022
  • 18July, 2019
  • 10April, 2020
  • 10November, 2020
  • 7August, 2017
  • 5December, 2019
  • 4March, 2023
  • 3August, 2018
  • 3June, 2018
  • 3May, 2023
  • 2February, 2023
  • 1November, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • 231tsv
  • 141fastq
  • 128bam
  • 127bigWig
  • 98txt
  • 52zippedFastqFolder
  • 8csv
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
Organism
  • 488Homo sapiens
Biosample type
  • 298tissue
  • 186primary cell
  • 15cell line
  • 2in vitro differentiated cells
  • 2stem cell
Organ
  • 100pancreas
  • 94heart
  • 84bone element
  • 78epithelium
  • 72kidney
  • 10lung
  • 8connective tissue
  • 6blood vessel
  • 6liver
  • 6vasculature
  • 4adipose tissue
  • 4brain
  • 3musculature of body
  • 2artery
Project
  • 357AMP
  • 85HPAP
  • 47KPMP
  • 10LungMap
  • 4community
Genome assembly (visualization)
  • 127GRCh38
  • 127hg19
Lab
  • 331AMP-T2D consortium
  • 85Klaus Kaestner, Upenn
  • 47KPMP
  • 11Katalin Susztak, Upenn
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 5Bing Ren, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 100inconsistent ontology term
  • 9audit script error
Audit category:
  • 1inconsistent assembly
assay_title!
  • total RNA-seq
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

503 results

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Clear Filters
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
ChIP-seq
STARR-seq
snDrop-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
bone element84
kidney64
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
primary cell
Langerhans cell85
pancreatic acinar cell12
pancreatic alpha cell12
pancreatic beta cell12
pancreatic delta cell11
cell line
EndoC_BH161
EndoC-BH111
HEK293T2
HepG22
MIN61
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
stem cell
SB Ad3.111
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