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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 755ChIP-seq
  • total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 755DNA binding
  • 260DNA accessibility
  • 106Transcription
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 112October, 2019
  • 101May, 2020
  • 84May, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 56August, 2017
  • 50August, 2021
  • 43July, 2018
  • 41February, 2023
  • 40March, 2020
  • 39April, 2018
  • 36July, 2019
  • 28December, 2018
  • 24November, 2019
  • 19February, 2021
  • 16January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2December, 2019
  • 2May, 2022
  • 2September, 2017
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 966bam
  • 885bigWig
  • 728bed narrowPeak
  • 622fastq
  • 529bigBed narrowPeak
  • 152tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1238Homo sapiens
Biosample type
  • 443cell line
  • 387primary cell
  • 291tissue
  • 113in vitro differentiated cells
  • 4stem cell
Organ
  • 412liver
  • 187pancreas
  • 152epithelium
  • 79brain
  • 58blood
  • 58bodily fluid
  • 51connective tissue
  • 47kidney
  • 44vasculature
  • 39blood vessel
  • 28heart
  • 19vein
  • 18musculature of body
  • 9adipose tissue
  • 7artery
  • 6eye
  • 5bone element
  • 5limb
  • 4skeleton
  • 3embryo
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1140AMP
  • 88T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 965hg19
  • 811GRCh38
Lab
  • 1095AMP-T2D consortium
  • 99Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Bing Ren, UCSD
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 83inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_title!
  • total RNA-seq
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1238 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
cell line
HepG233512112
GM1287856
EndoC_BH12263
Panc11111
RCC 7860 HIF1a re-expression4
primary cell
monocyte47211
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
pancreatic alpha cell1116
tissue
islet of Langerhans2237612134
liver421111
brain11121
heart51411
kidney12141
in vitro differentiated cells
neural progenitor cell2110
adipocyte7811
embryonic stem cell1151
hepatocyte15
cardiomyocytes (cardiac muscle cell)1222
stem cell
hESC3
mesenchymal stem cell1
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