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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • total RNA-seq
  • 181ChIP-seq
  • 105ATAC-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 181DNA binding
  • 140DNA accessibility
  • 100Transcription
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 70May, 2021
  • 47October, 2019
  • 45May, 2020
  • 42July, 2018
  • 40August, 2021
  • 39April, 2018
  • 35February, 2023
  • 33August, 2017
  • 30June, 2019
  • 29March, 2020
  • 13July, 2019
  • 7October, 2017
  • 5February, 2021
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 341bam
  • 325bigWig
  • 173bed narrowPeak
  • 134tsv
  • 126fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
Organism
  • 467Homo sapiens
Biosample type
  • 219primary cell
  • 183tissue
  • 64in vitro differentiated cells
  • 1stem cell
Organ
  • 126pancreas
  • 72epithelium
  • 55brain
  • 40connective tissue
  • 13heart
  • 13liver
  • 12kidney
  • 9adipose tissue
  • 5musculature of body
  • 4bone element
  • 4skeleton
  • 2blood
  • 2blood vessel
  • 2bodily fluid
  • 2eye
  • 2intestine
  • 2vasculature
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 396AMP
  • 67T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 352hg19
  • 285GRCh38
Lab
  • 368AMP-T2D consortium
  • 80Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

467 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4721
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans221861224
brain612
liver6111
heart1411
frontal cortex211
in vitro differentiated cells
neural progenitor cell2110
embryonic stem cell1141
adipocyte741
osteoblast11
cardiomyocytes (cardiac muscle cell)1
stem cell
mesenchymal stem cell1
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