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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
1
RRBS
Assay category
113
Transcription
6
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Date released
64
August, 2021
47
September, 2023
8
February, 2021
3
December, 2019
3
May, 2023
1
July, 2019
Available data
62
txt
10
tsv
bam
5
csv
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
bigWig
1
hic
Organism
126
Homo sapiens
Biosample type
126
tissue
5
primary cell
4
cell line
Organ
126
kidney
106
heart
92
bone element
73
liver
73
pancreas
53
eye
48
connective tissue
47
adipose tissue
38
musculature of body
37
brain
20
lung
15
epithelium
11
blood vessel
11
vasculature
8
limb
8
skeleton
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
79
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
2
hg19
Lab
67
Katalin Susztak, Upenn
47
KPMP
12
AMP-T2D consortium
Audit category:
7
audit script error
assay_title!
whole genome sequencing assay
assembly!
GRCh38
files.file_type!
bam
BIOSAMPLE
ASSAY
126 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
snDrop-seq
RNA microarray
Hi-C
RRBS
tissue
kidney
64
49
6
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
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