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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1055
ChIP-seq
1024
total RNA-seq
302
ATAC-seq
179
DNase-seq
175
single cell RNA-seq
85
RNA microarray
30
pCHi-C
27
WGBS
26
snATAC-seq
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1215
Transcription
1055
DNA binding
511
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
713
histone modification
712
histone
359
broad histone mark
352
narrow histone mark
201
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
566
February, 2021
352
August, 2017
271
August, 2021
250
October, 2019
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
111
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
March, 2019
4
November, 2020
1
August, 2018
1
December, 2019
Available data
2005
bam
1861
bigWig
1089
bed narrowPeak
1055
tsv
578
bigBed narrowPeak
518
fastq
229
bed bed3+
228
tagAlign
214
bed broadPeak
177
bigBed broadPeak
154
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
2
ibed
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2958
Homo sapiens
Biosample type
2575
tissue
910
primary cell
660
cell line
392
in vitro differentiated cells
10
stem cell
Organ
644
connective tissue
507
pancreas
489
adipose tissue
314
heart
292
kidney
265
brain
183
liver
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
38
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2870
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1962
GRCh38
1881
hg19
4
hg18
Lab
2561
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
206
inconsistent ontology term
27
inconsistent control
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
assay_title!
whole genome sequencing assay
audit.ERROR.category!
audit script error
month_released!
May, 2020
BIOSAMPLE
ASSAY
2967 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
71
292
68
1
6
4
6
3
1
1
4
adipose tissue
2
382
3
1
3
kidney
27
49
75
13
59
6
1
1
1
liver
95
24
20
2
1
1
3
1
1
1
bone element
84
+ See 174 more…
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 31 more…
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