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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
31
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
34
June, 2019
24
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
60
bigWig
52
bed narrowPeak
48
bam
45
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
9
tsv
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
83
Homo sapiens
Biosample type
78
tissue
5
primary cell
Organ
857
pancreas
752
liver
658
connective tissue
487
adipose tissue
424
epithelium
288
heart
281
brain
227
vasculature
223
blood vessel
198
kidney
139
artery
120
limb
83
musculature of body
75
bone element
69
blood
69
bodily fluid
60
eye
43
nerve
23
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
83
AMP
Genome assembly (visualization)
62
hg19
44
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
assay_title!
whole genome sequencing assay
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bedMethyl
month_released!
August, 2021
BIOSAMPLE
ASSAY
83 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
1
muscle of leg
12
7
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle cell
1
2
skeletal muscle satellite cell
1
1
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