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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
31
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
Available data
60
bigWig
52
bed narrowPeak
48
bam
45
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
55
Homo sapiens
Biosample type
50
tissue
5
primary cell
Organ
856
pancreas
692
liver
652
connective tissue
487
adipose tissue
408
epithelium
266
heart
245
brain
213
vasculature
211
blood vessel
135
artery
124
kidney
86
limb
75
bone element
69
blood
69
bodily fluid
57
eye
55
musculature of body
41
nerve
24
spleen
23
embryo
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
55
AMP
Genome assembly (visualization)
33
hg19
13
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
assay_title!
whole genome sequencing assay
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed broadPeak
month_released!
August, 2021
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
2
1
skeletal muscle satellite cell
1
1
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